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Dr.
Karthikeyan P

MD, PhD

Affiliation

Department of
Biochemistry

Contact

Email :
karthikeyan_p@aiims.edu
karthi.dr@gmail.com
Phone :

Additional Responsibility

Office Address

Address : Room No: 3013 (Seminar Room), Department of Biochemistry, 
3rd Floor Teaching Block, AIIMS, New Delhi – 110029

General OPD

Special Clinic

Surgery Days

Speciality of work

Areas of teaching

Areas of teaching

Public profiles:

Orcid | Google Scholar | Research Gate | YouTube | Goodreads

Academic Qualifications:

Sr. No.DegreeYearSubjectUniversity/Institution
1.MBBS2010All SubjectsKanyakumari Government Medical College
2.MD2015BiochemistryMaulana Azad Medical College
3.DNB2016BiochemistryNational Board of Examinations
4.PhD2022BiochemistryAIIMS, New Delhi

Work Experience:

Sr. No.Positions heldName of the InstitutePeriod
1Junior ResidentMaulana Azad Medical College2012 - 2015
2Senior ResidentAIIMS, New Delhi2015 - 2018
3Research Associate IIAIIMS, New Delhi2019 - 2022
4Assistant ProfessorMaulana Azad Medical CollegeMay 2022 – Jan 2023

Book and Book Chapters:

  • Biochemistry For Undergraduates, First Edition, CBS Publishers (ISBN – 9789388725972)
  • Eleven chapters in Springer - Nature publication, Encyclopaedia of Animal Cognition and Behaviour

Memberships:

  • Member of National Academy of Medical Sciences, India (MNAMS)
  • Life member of Association of Medical Biochemists of India (AMBI)
  • Life Member of Clinical Biochemists of India (ACBI)
  • Life Member of Indian Immunology Society

Positions Available in the Lab:

If you are interested in working on similar projects as ours or have a unique idea in any field that you wish to pursue, please send an email to karthikeyan_p[at]aiims[dot]edu.People with independent fellowships are welcomed. Let's explore opportunities for collaboration and growth together.

Professional Recognition/Award/ Prize/Certificate:

Sr. NoName of AwardAwarding AgencyYear
1FIRST PRIZE in Biochemistry Quiz CompetitionAssociation of Medical Biochemists of India2014
2Certificate for BEST JOURNAL CLUB PRESENTATIONDept. of Biochemistry, AIIMS, Delhi2017
3Acknowledgement in Harper illustrated Biochemistry, 31st edition for suggestions and correctionsVictor W. Rodwell (chief editor)2018
4Research Associate FellowshipIndian Council of Medical Research2019
5Certificate for Quiz MasterIndian Immunology Society2020, 2021, 2022

Research focus

Leukemia Biology, Bioinformatics, Medical Education

Publications (PubMed indexed only):

Sr. NoAuthor(s)TitleName of JournalVolumePageYear
1Pethusamy K, Seethy A, Dhar R, Karmakar A, Chaudhary S, Bakhshi S, P JK, Chopra A et al.Loss of TET2 with reduced genomic 5-hmC is associated with adverse-risk AMLLeukemia & lymphoma63(14)3426-34322022
2Sahoo OS, Pethusamy K, Srivastava TP, Talukdar J et al.The metabolic addiction of cancer stem cells.Frontiers in oncology12:955892.eCollection2022
3Chattopadhyay I, Dhar R, Pethusamy K, Seethy A et al.Exploring the Role of Gut Microbiome in Colon CancerApplied Biochemistry and Biotechnology193(6)1780-17992021
4Seethy A, Pethusamy K, Chattopadhyay I, Sah R et al.TETology: Epigenetic Mastermind in ActionApplied Biochemistry and Biotechnology193(6)1701-17262021
5Dhar R, Seethy A, Singh S, Pethusamy K, Srivastava T et al.Cancer immunotherapy: Recent advances and challenges.Journal of Cancer Research and Therapeutics17(4)834-8442021
6Dhar R, Singh S, Mukherjee I, Pethusamy K, Purkayastha K et al.EMTiness in pseudo-malignant behavior of trophoblasts during embryo implantation.Frontiers in Bioscience-Landmark26(4)717-7432021
7Seethy AA, Singh S, Mukherjee I, Pethusamy K et al.Potential SARS-CoV-2 interactions with proteins involved in trophoblast functions - An in-silico study.Placenta103141-1512021
8Chakraborty M, Singh P, Dsouza JMP, Pethusamy K et al.Fasting and postprandial lipid parameters: A comparative evaluation of cardiovascular risk assessment in prediabetes and diabetes.J Family Med Prim Care28;9(1)287-2922020
9Dhar R, Pethusamy K, Singh S, Mukherjee I et al.Draft genome of Ompok bimaculatus (Pabda fish).BMC Research Notes26;12(1)8252019
10Dhar R, Seethy A, Pethusamy K, Singh S et al.De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing.Gigascience1;8(5)giz0382019
Profile Photo

Dr.
Siddhartha Kundu

MD, PhD

Affiliation

Associate Professor
Department of
Biochemistry

Contact

Email :
siddhartha_kundu@aiims.edu
siddhartha_kundu@yahoo.co.in
Phone :
+91-11-26546514

Additional Responsibility

Office Address

General OPD

Special Clinic

Surgery Days

Speciality of work

Areas of teaching

Areas of teaching

Areas of Interest

Mathematical analyses of biochemical reactions & metabolic networks Mathematical modelling and simulations of complex biochemical systems Algorithms for molecular biology

Servers/Software developed

HyperlinkDescription
http://doi.org//10.1142/S0219720022500184 https://cran.r-project.org/package=TemporalGSSA[Siddhartha_kundu_img1.png]
http://doi.org//10.3389/fmolb.2023.1206502 https://cran.r-project.org/package=ReDirection[Siddhartha_kundu_img2.png]
http://doi.org//10.1177/11779322211045878 http://178.63.18.214/ProTG4.html[Siddhartha_kundu_img2.png]
http://doi.org/10.1186/s13104-021-05477-z http://178.63.18.214/Fe2OG.html[Siddhartha_kundu_img2.png]

Educational qualifications

DegreeSubjectUniversity/InstitutionYear
PhDComputational Biology & BioinformaticsSchool of Computational and Integrative Sciences (SCIS), Jawaharlal Nehru University, New Mehrauli Road, New Delhi 1100672014-2018
MDBiochemistryAll India Institute of Medical Sciences (AIIMS), Ansari Nagar, New Delhi 1100291999-2001
MBBSPre-&Para-/Medical/ Surgical subjectsUniversity College of Medical Sciences (UCMS), Dilshad Garden, New Delhi 1100951992-1996

Memberships

1.Society for Mathematical Biology (SMB): Life member (ID:36503496)
2.European Society for Mathematical and Theoretical Biology (ESMTB) : Life member ID: 50143836
3.Elected member Sigma Xi society ( Scientific Research Honors Society)

Positions held

PositionSubject/WorkUniversity/InstitutionYear
Associate Professor Assistant ProfessorBiochemistryAll India Institute of Medical Sciences (AIIMS),
Ansari Nagar, New Delhi 110029
2023-2019-2023
Associate ProfessorBiochemistry

Army College of Medical Sciences (ACMS),
Brar Square, Delhi Cantt., New Delhi – 110010

Dr. Baba SahebAmbedkar Medical College and Hospital (BSAMCH), Govt. of NCT of Delhi, Rohini, Delhi 110085

2015-2018

2018-2019

Assistant ProfessorBiochemistryArmy College of Medical Sciences (ACMS),
Brar Square, Delhi Cantt.,New Delhi – 110010
2009-2014
Scientist ‘D’ (Medical)Program OfficerIndian Council of Medical Research (ICMR),
V. RamalingaswamiBhawan,
Ansari Nagar, New Delhi 110029
07-10/2019
Senior Level ConsultantProgram DirectorInformation Technology Research Academy (ITRA),
Digital India Corporation (formerly Media Lab Asia),
Ministry of Electronics and Information Technology,
C-DOT campus, New Delhi 110030
2016-2017
Research ConsultantComputational BiologyIndia Research Labs (IRL) IBM2002-2003

Research Associate/Fellow/Scientist

 

PostDoctoral work

International Center for Genetic Engineering and Biotechnology (ICGEB)

National Institute of Immunology (NII)

ICMR-National Institute of Pathology (NIOP)

Indian Institute of Technology Delhi (IITD)

05-10/2014

2005-2008

2003-2004

01-05/2002

Award/recognition:

AIIMS excellence research award (Certificate of commendation)

1.2022Kundu S#*. TemporalGSSA: a numerically robust R-wrapper to facilitate computation of a metabolite-specific and simulation time-dependent trajectory from stochastic simulation algorithm (SSA)-generated datasets. Jour Bioinf. Comp. Biol. 2022, 20(4):2250018. PMID: 35941839 JBCB2022 (Additional Material).
2.2021Kundu S#*. Mathematical modeling and stochastic simulations suggest that low-affinity peptides can bisect MHC1-mediated export of high-affinity peptides into “early”- and “late”-phases. Heliyon. 2021, 7(7):e07466. PMID: 34286133 [HYON2021] (Additional Material).

Research publications (complete citations)

2024
  • (Preprint) Kundu S#*. Construction, analysis and assessment of relevance of an algebraic model for a class of biochemical networks. (https://doi.org/10.1101/2024.03.07.583960)
  • Kundu S#*. A mathematically rigorous algorithm to define, compute and assess relevance of the probable dissociation constants in characterizing a biochemical network. Scientific Reports2024, 14. PMID: 38347039 [SCIR2024] (Additional Material).
2023
  • Kundu S#*. ReDirection: an R-package to compute the probability dissociation constant for every reaction of a user-defined biochemical network. Front Mol Biosci. 2023, 10. PMID: 37942290 [FMBI2023]. (Additional Material)
2022
  • Kundu S#*. Modeling ligand-macromolecular interactions as eigenvalue-based transition-state dissociation constants may offer insights into biochemical function of the resulting complexes. Math Biosci Eng. 2022, 19(12): 13252-275. [MBE2022] (Additional Material).
  • Kundu S#*. TemporalGSSA: a numerically robust R-wrapper to facilitate computation of a metabolite-specific and simulation time-dependent trajectory from stochastic simulation algorithm (SSA)-generated datasets. Jour Bioinf. Comp. Biol. 2022, 20(4):2250018. PMID: 35941839JBCB2022 (Additional Material).
2021
  • Kundu S#*. ProTG4: A Web Server to Approximate the Sequence of a Generic Protein From an in Silico Library of Translatable G-Quadruplex (TG4)-Mapped Peptides. Bioinform Biol Insights. 2021, Sep 28;15:11779322211045878. PMID: 34602814. [BBI2021](Additional Material).
  • Kundu S#*. Mathematical modeling and stochastic simulations suggest that low-affinity peptides can bisect MHC1-mediated export of high-affinity peptides into “early”- and “late”-phases. Heliyon. 2021, 7(7):e07466. PMID: 34286133 [HYON2021](Additional Material).
  • Kundu S#*. Fe(2)OG: An integrated HMM profile-based web server to predict and analyze putative non-haemiron(II)- and 2-oxoglutarate- dependent dioxygenase function in protein sequences. BMC Res Notes. 2021, 14(1):80. PMID: 33648553. [BMRN2021] (Additional Material).
2020
  • Kundu S#*. Mathematical model of a short translatable G-quadruplex and an assessment of its relevance to misfolding-induced proteostasis. Math Biosci Eng. 2020, 17(3): 2470-2493. PMID: 32233549. [MBE2020] (Additional Material).
2019
  • Kundu S#*. Insights into the mechanism(s) of digestion of crystalline cellulose by plant class C GH9 endoglucanases. J Mol Model. 2019 Jul 23;25(8):240. PMID: 31338614 [JMM-2019] (Additional Material).
2018
  • Kundu S#*. Mathematical basis of predicting dominant function in protein sequences by a generic HMM-ANN algorithm. Acta Biotheor. 2018 Jun;66(2):135-148. PMID: 29700659,32385619 [ACBI2018] (Additional Material).
  • Kundu S*, Sharma R*. Origin, evolution, and divergence of plant class C GH9 endoglucanases. BMC Evol. Biol. 2018 May 30;18(1):79. PMID: 29848310 [BMEB2018] (Additional Material).
2017
  • Kundu S#*. Mathematical basis of improved protein subfamily classification by a HMM-based sequence filter. Math Biosci. 2017 Nov;293:75-80. doi:10.1016/j.mbs.2017.09.001. Epub 2017 Sep 13. PubMed PMID: 28916136. (Additional Material).
2016
  • Kundu S*, Sharma R*. In silico Identification and Taxonomic Distribution of Plant Class C GH9 Endoglucanases. Front Plant Sci. 2016 Aug 12;7:1185. PMID: 27570528 [FPS2016] (Additional Material).
  • Kundu S#*. Stochastic modelling suggests that an elevated superoxide anion-hydrogen peroxide ratio can drive extravascular phagocyte transmigration by lamellipodium formation. J Theor Biol. 2016 Oct 21;407:143-54. PMID: 27380944. (Additional Material).
2015
  • Kundu S#*. Co-operative intermolecular kinetics of 2-oxoglutarate dependent dioxygenases may be essential for system-level regulation of plant cell physiology. Front Plant Sci. 2015 Jul 15;6:489. PMID: 26236316 [FPS2015a] (Additional Material).
  • Kundu S#*. Unity in diversity, a systems approach to regulating plant cell physiology by 2-oxoglutarate-dependent dioxygenases. Front Plant Sci. 2015 Mar 11;6:98. PMID: 25814993 [FPS2015b] (Additional Material).
2012
  • Kundu S#*. Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases. BMC Res Notes. 2012 Aug 4;5:410. PMID: 22862831 [BMRN2012] (Additional Material).
2011
  • Kundu S*, Subodh S. Gradient sensing in vectorial chemotaxis – a novel role for Reactive Oxygen Species. International Journal of Trends in Medicine. 2011 1; 54-59. [IJTM2011]
2002
  • Singh N, Khanna N, Sharma H, Kundu S, Azmi S. Insights into the molecular mechanism of apoptosis induced by TNF-alpha in mouse epidermal JB6-derived RT-101cells. Biochem Biophys Res Commun. 2002 Jul 5;295(1):24-30. PMID:12083761. [BBRC2002]
 (#) Single author; (*)Corresponding author
Profile Photo

Dr.
Rakhee Yadav

Affiliation

Additional Professor
Department of
Biochemistry

Contact

Email :
rakheeyadav79@gmail.com
rakheeyadav@aiims.edu
Phone :

Additional Responsibility

Office Address

General OPD

Special Clinic

Surgery Days

Speciality of work

Areas of teaching

Areas of teaching

Academic Details

DegreeUniversity/ InstitutionYear of Passing
MBBSPt BD Sharma PGIMS, MD University, Rohtak (Haryana)2002
MD (Biochemistry)Pt BD Sharma PGIMS, Pt BD Sharma UHS, Rohtak (Haryana)2011

Positions held (starting from the most recent):

PositionDepartmentUniversity/ InstitutionPeriod
Associate ProfessorBiochemistryAIIMS Delhi2020 onwards
Assistant ProfessorBiochemistryAIIMS Delhi2016-2020
Assistant ProfessorBiochemistrySGT Medical College & Hospital, Gurgaon (Haryana)2014-2016
Senior ResidentBiochemistryVMMC & Safdarjung Hospital Delhi2011-2014

Research Focus of the Lab/ Key Areas: Adipocyte Biology, Insulin Resistance, Obesity & metabolic syndrome

Projects & Funding: ICMR Extramural and AIIMS Intramural Grants

List of Lab members:

1. Mr Blessed Raj (PhD Scholar):

Mr Blessed Raj has done MSc in Medical Biochemistry from JIPMER Puducherry and got registered as PhD scholar at AIIMS in Nov 2020. His proposed work is to elucidate the role of ECM-Adipocyte communication in obesity induced adipose tissue dysfunctions

2. Dr Astha Sachan (Senior Resident):

Has done MD Thesis under my supervision titled, “Study of ECM Remodeling in adipose tissue dysfunctions in obesity” and presently working in ongoing lab projects.

She has won Mrs. Dwarka Prasad Trust Travel Grant in 2019 to present her work at 15th Asia Pacific Federation for Clinical Biochemistry and Laboratory Medicine (APFCB) Congress; Jaipur in Nov 2019

Also won best oral paper award in AMBION 2020: National Postgraduate Update cum CME, Chandigarh, November, 2020 (Online Presentation)

3. Dr Kuntal Chakraborty (Final year MD Student):

Thesis title “A prospective study of changes in human Gut Microbiota (GM) and its association with insulin sensitivity in obese individuals undergoing Bariatric Surgery”

He has been awarded ICMR financial support for his MD thesis (Dec 2020)

4. Dr Prachi Priyadarshini (Final year MD student):

Thesis title “Study of the expression of vascular endothelial growth factor (VEGF-A) and its isoforms, in Obesity and their association with insulin sensitivity”

5.Dr Khushboo Sharma (Second year MD student):

Thesis titled “Assessment of Amphiregulin and CRISPLD1 as visceral adipose tissue derived modulators of cardiovascular health in obesity”

Research Focus of the Lab/ Key Areas: Adipocyte Biology, Insulin Resistance, Obesity & metabolic syndrome

Projects & Funding: ICMR Extramural and AIIMS Intramural Grants

List of Lab members:

1. Mr Blessed Raj (PhD Scholar):

Mr Blessed Raj has done MSc in Medical Biochemistry from JIPMER Puducherry and got registered as PhD scholar at AIIMS in Nov 2020. His proposed work is to elucidate the role of ECM-Adipocyte communication in obesity induced adipose tissue dysfunctions

2. Dr Astha Sachan (Senior Resident):

Has done MD Thesis under my supervision titled, “Study of ECM Remodeling in adipose tissue dysfunctions in obesity” and presently working in ongoing lab projects.

She has won Mrs. Dwarka Prasad Trust Travel Grant in 2019 to present her work at 15th Asia Pacific Federation for Clinical Biochemistry and Laboratory Medicine (APFCB) Congress; Jaipur in Nov 2019

Also won best oral paper award in AMBION 2020: National Postgraduate Update cum CME, Chandigarh, November, 2020 (Online Presentation)

3. Dr Kuntal Chakraborty (Final year MD Student):

Thesis title “A prospective study of changes in human Gut Microbiota (GM) and its association with insulin sensitivity in obese individuals undergoing Bariatric Surgery”

He has been awarded ICMR financial support for his MD thesis (Dec 2020)

4. Dr Prachi Priyadarshini (Final year MD student):

Thesis title “Study of the expression of vascular endothelial growth factor (VEGF-A) and its isoforms, in Obesity and their association with insulin sensitivity”

5.Dr Khushboo Sharma (Second year MD student):

Thesis titled “Assessment of Amphiregulin and CRISPLD1 as visceral adipose tissue derived modulators of cardiovascular health in obesity”

Profile Photo

Dr.
Pramod Kumar Gautam

Affiliation

Additional Professor
Department of
Biochemistry

Contact

Email :
gautam@aiims.edu
pramodgautam_13@yahoo.com
Phone :
(O) 011-26594682; (Ext) 4682

Additional Responsibility

Office Address

Room No. 3040, 3rd Floor, Teaching Block,

Department of Biochemistry

All India Institute of Medical Sciences

Ansari Nagar, New Delhi-110029

General OPD

Special Clinic

Surgery Days

Speciality of work

Areas of teaching

Areas of teaching

Academic carrier

I am currently working as an additional professor in the Department of Biochemistry. My PhD and post-doctoral fellowship from Banaras Hindu University, Varanasi, India 

Academic Activity

UG, PG teaching, and research

Administrative Positions/Activities

  • Member of the transport committee, AIIMS, New Delhi
  • Worked as a nodal officer for COVID control
  • Ph.D. course work in charge

Membership in the Society

  • Life member of the Indian Immunology Society, India
  • Life Member of Cancer Immunotherapy (CIMT), Germany
  • Indian Academy of Biomedical Sciences (IABS)
  • The Indian Association of Cancer Research (IACR)
  • Association of Clinical Biochemistry (ACBI)

Reviewer and Editorial Board Membership

  • The International Journal of Gastrointestinal Cancer
  • Journal of Nano particle research (2016 onward)
  • Journal of Leukemia Research (2016 onward)
  • BMC Cancer

Research Work: - Laboratory of Immunology and Cancer Immunotherapy

The immune system can be likened to a sophisticated army, equipped with various tools and mechanisms to protect the body from infections and cancers. However, during tumor development, cancer cells release substances that suppress the immune system, allowing the tumor to grow and spread. To combat this, researchers are focusing on developing immunotherapies that enhance the body's natural defenses against cancer. These immunotherapies target specific pathways involved in tumor growth, angiogenesis, and immune suppression. By discovering and studying the effects of natural compounds and plant extracts, scientists hope to develop safe and effective treatments for cancer that can be used in combination with existing therapies. The goal is to improve cancer management, early detection, and targeted drug delivery to prevent the progression of the disease. Our research lab utilizes advanced molecular & immunological techniques.

Extramural and Intramural Project:-

  • Elucidating the targeted, therapeutic role of docetaxel-loaded-HSP70 peptide complex in PDX Mouse Models. (PI, Ongoing, ICMR)
  • Role of M1 macrophage on DNA methylation and PI3K-AKT Signaling Pathway analysis in tumor-associated mesenchymal stem cells in Breast cancer.(PI, Ongoing, AIIMS)
  • Development of anti-proliferative agent form boerhaabia diffusa and citrullus colocynthis plant extract in human bladder cancer. (PI, Ongoing, AIIMS)
  • Role of Macrophage in the regulation of Bone and Blood forming stem cell and progenitor cells migration and development. (PI, Completed, DBT)
  • Evaluation of tumor-derived exosomes in blood during pre and post treatment of pancreatic cancer patients(PI, Completed, AIIMS)
  • Development of targeted drug delivery using liposomes/nanoparticles on cancer stem cell using herbal plant extract and hsp70- tumor antigen and to evaluate its anti-tumor function. (PI,SERB, Completed)
  • To emphasis the role of macrophage phenotype on mesenchymal stem cell in breast cancer. (Completed, AIIMS)
  • To study the role of β-defensin on stem cells, cancer stem cells remodelling and its associated microenvironments(AIIMS, Completed)

Group members:-

  • PhD thesis: completed-2; ongoing-1
  • MD Thesis: Completed-1; ongoing-1
  • Post Doc Fellow-1,
  • Research Scientist: 1 (an ICMRfunded project)
  • TARE, SERB, New Delhi—Dr. Qulsum Akhtar.
  • Project Staff: 2

Current lab members: Miss Anita (CSIR-JRF); Rupinder Kaur (CSIR-SRF, NET), Dr. Sreekar; Dr. Neha Singh; Dr. Soni Kumari (Research Scientist-II); Ankit Kumar; and Bharta Sinha (DEO, AIIMS, New Delhi).

  • Miss Anita 

Anita submitted her thesis in the year 2024. Her title of thesis is to elucidate the immunomodulatory and anti-tumor role of m1 macrophage on bone marrow derived mesenchymal stem cells: implications in breast cancer. Anita has been qualified CSIR-JRF and currently working as a research scientist in the Dept. of Pharmacology at AIIMS, New Delhi.

  • Rupinder Kaur

ORCID: 0000-0002-0158-8307

Rupinder Kaur, a 4th year Ph.D. student (2020-present) and CSIR-SRF (Direct) fellow, delves into the fascinating world of cancer-immunology. Her research focuses on unraveling the immunomodulatory effects of tumor-derived exosomes on Gamma-Delta T cells. By exploring this intricate interaction, she aims to uncover potential therapeutic strategies for cancer treatment. Rupinder's work primarily consists of the analysis of differential micro-RNA cargo in extracellular vesicles in peripheral blood of cancer patients. She is also working on elucidating the mysteries of the change in polarity of gamma delta T cells under the effect of tumor derived extracellular vesicles. She completed her Master in Biochemistry in 2019 from Punjab Agricultural University, Ludhiana.

Thesis Title: “To study the immunomodulatory effect of tumor derived exosomes in Gamma-Delta T cells.”

  • Ankit Kumar

Myself, Ankit Kumar and I have done my B.Sc. in Zoology (Hons) from St. Xavier College Ranchi in 2018–21. and currently I have joined as M.Sc student and am working on a thesis titled "Differentially expressed exosomal miRNA derived from Pancreatic Ductal AdenoCarcionoma (PDAC)".

  • Neha Singh

Qualification- PhD in Microbiology

ORCID-https://orcid.org/0000-0001-9802-0445

Current affiliation- Project Student, Department of Biochemistry, All India Institute of Medical Sciences

Project Title-Elucidating the targeted therapeutic role of docetaxel- loaded- HSP70 peptide complex in PDX mouse models.

Expertise- Expert in microbiology, medicinal plants, and cancer biology. Skilled in analyzing microbial interactions, identifying medicinal compounds in plants, and studying cancer cell signaling pathways. Proficient in microbiological techniques, plant extraction methods, and cancer cell culture assays. Experience in research, drug discovery, and contributing to advancements in medical science.

  • Soni Kumari (Research Scientist II)

PhD in Biochemistry

ORCID ID: 0000-0002-9743-3202

I am currently working as a Research Scientist II on an ICMR-funded project titled “Elucidating the Therapeutic Role of Docetaxel-Loaded HSP Peptide Complex in PDX Mouse Model.”

  • Dr. K. V. Sreekar ( MD student)

He has a strong interest in cancer and cancer immunology and is about to embark on research in breast cancer immunology. His focus will be on developing new methods to detect novel biomarkers that can aid in the early diagnosis of breast cancer. He has finished his M.B.B.S. from Dr. NTR university of health sciences, Andhra Pradesh.

Previous Student:-

Dr. Sonam Agarwal (ICMR- RA);Dr.. Khuswant Singh (CSIR-JRF); Dr. Kunal Kumar; Dr. Vijay Mohan (Post Doc Fellow); Pavit Singh (MBBS-STS student).

  • Sonam Agarwal:- complete her work on “Detection of prostate cancer biomarker using sensitive and rapid lateral flow device with diagnostic and prognostic significance” (ICMR-RA)
  • Khushwant Singh:- Submitted his thesis on Determining the immunomodulatory and antitumor function of hsp70 chemotherapeutic drug conjugates on cancer stem cells
  • Marilyn Masih:-Completed her thesis on “Comparative analysis between different stage Cancer patients to discover Novel Blood – based biomarkers for detection of early stage breast cancer- A pilot study”
  • Pavit Singh (MBBS-STS student) “To study the differential exosomal abundance in pancreatic cancer patients”

Publication Details

Profile Photo

Dr.
Riyaz Ahmad Mir

Affiliation

Additional Professor
Department of
Biochemistry

Contact

Email :
riyaz978@gmail.com
riyazmir@aiims.edu
Phone :
(O) 011-26593706 (Ext) 3706

Additional Responsibility

Office Address

Address: Room No 3040, 3rd Floor, Teaching block,

Department of Biochemistry

All India Institute of Medical Sciences

Ansari Nagar, New Delhi-110029

General OPD

Special Clinic

Surgery Days

Speciality of work

Areas of teaching

Areas of teaching

Employment record:

Additional ProfessorBiochemistry, AIIMS, New Delhi2023- present
Associate ProfessorBiochemistry, AIIMS, New Delhi2020-2022
Assistant ProfessorBiochemistry, AIIMS, New Delhi2016-2020

Research Experience:

Postdoc FellowUniversity of Nebraska Medical Center, USA2011-2016
PhDBiochemistry, AIIMS, New Delhi2005-2011

Reviewer and Editorial Board Member:

  • Frontiers in Oncology
  • GENE
  • Editorial board member Translational pathology and Laboratory medicine
  • Editorial board member Clinical pathology and research Journal

     

Research focus of the lab:

We are a dedicated team of researchers focused on understanding the role of the R2TP complex in malignancy. The R2TP complex is a co-chaperone of Hsp90, involved in the assembly and stabilization of various macromolecular complexes in the cell. The interactions and collaborative functions of the R2TP complex with its clients remain poorly understood and unexplored. Our research delves into the molecular associations of the complex whilst cancer progression and how it can potentially be targeted for therapeutic interventions.

Additionally, we explore the functions of tumour suppressors, crucial proteins that play a pivotal role in preventing the uncontrolled growth of cancer cells. Understanding how these proteins operate and how they can be manipulated is a key aspect of our work.

Furthermore, our lab is also interested in the effects of genetic manipulation in mammalian inner ear cells. This area of research is important for understanding hearing loss and other inner ear disorders, and it has implications for the development of potential treatments.

We are committed to advancing knowledge in these areas and contributing to the development of novel strategies for treatment. To learn more about our ongoing projects and recent discoveries, please email

Dr Riyaz Mir

L to R: Ayesha, Pankaj, Hema, Dr Riyaz, Dhiraj and Mahaiwon

Present Lab members:

  • Ms Mahaiwon Shadang, PhD student, SRF-CSIR

Mahaiwon is investigating the molecular associations and clinical significance of the R2TP complex in cervical cancer. She joined the lab in August 2017 and completed her M.Sc. Medical Biochemistry in AIIMS, New Delhi in 2019 with a thesis that analyses the expression of the R2TP complex in Diffuse Large B Cell Lymphoma. She qualified for the CSIR NET JRF in 2017.

  • Mr Dhiraj Kumar Singh, PhD Student, SRF-CSIR

Dhiraj started work at AIIMS as JRF in 2018 and enrolled as a PhD student in 2019. He studies the role of PIH1D1 (a subunit of the R2TP complex) in various phases of the cell cycle. He has completed his M.Sc. Bioinformatics from Jamia Millia Islamia University. He also qualified for the CSIR JRF in 2017 with AIR-63.

  • Mr Pankaj Keshari, SRF

Pankaj’s work studies the trans-differentiation of inner ear supporting cells. This will provide insight into the development and function of supporting cells, leading to a better understanding of the biological roles these cells play.

  • Hema Yadav, PhD student, JRF-DBT

Hema studies the role of the R2TP complex in the etiology of thyroid cancer. She completed her M.Sc. Medical Biochemistry in AIIMS, New Delhi in 2021. Her Master's thesis explored the role of B cells in a spectrum of Tuberculosis. She has qualified CSIR JRF and DBT JRF.

  • Ayesha Rahman, PhD student, JRF-ICMR

Ayesha joined in October 2022 and works on “Effect of genetic manipulation in mammalian inner ear cells”. She completed her M.Sc. Biosciences from Jamia Millia Islamia University. She qualified ICMR JRF(AIR-51).

  • Sipriha Saxena (MD Biochemistry) She joined in February 2024

Key publications:

  • Hossain, M.M., Khalid, A., Akhter, Z. et al. Discovery of a novel and highly selective JAK3 inhibitor as a potent hair growth promoter. J Transl Med 22, 370 (2024). https://doi.org/10.1186/s12967-024-05144-4.
  • yadav VS, Bhatia A, Yadav R, Makker K, Singh DK, Mir RA. Effect of initial periodontal therapy on metallothionein levels in smokers and non-smokers with periodontitis. Odontology. 2024 Apr 8. doi: 10.1007/s10266-024-00937-x
  • Boruah Monikongkona, Gaddam Pranitha, Agarwal Shipra, Mir Riyaz Ahmad, Gupta Ranjan, Sharma Mehar C, Deo Suryanarayana V.S, Nilima Nilima. PD-L1 expression in rare and aggressive thyroid cancers: A preliminary investigation for a role of immunotherapy. Journal of Cancer Research and Therapeutics 2023 19(2):312-320,
  • Morankar Rahul, Nitesh Tewari, Vijay Mathur, Atif Mohammad, Kalpana Bansal, Sandeep Agrawal, Riyaz Mir. In-vitro Evaluation for Effects of Intracanal Medicaments on Viability, Proliferation, and Differentiation of Stem Cells From Apical Papilla–A Systematic Review. European Endodontic Journal 2022 (7) 3:167-168
  • Mishra N, Kumar S, Singh S, Bansal T, Jain N, Saluja S, Kumar R, Bhattacharyya S, Palanichamy JK, Mir RA, Sinha S, Luthra K. Cross-neutralization of SARS-CoV-2 by HIV-1 specific broadly neutralizing antibodies and polyclonal plasma. PLoS Pathog. 2021 Sep 24;17(9):e1009958. doi: 10.1371/journal.ppat.1009958. PMID: 34559854; PMCID: PMC8494312.
  • Lone M, Shadang M, Akhter Q, Kumar M, Mallick S, Gogia A, Nilima N, Chauhan SS, Mir RA. The Expression of the RUVBL1 Component of the R2TP Complex Correlates with Poor Prognosis in DLBCL. Pathobiology. 2022;89(3):146-156. doi: 10.1159/000520723. Epub 2022 Jan 25. PMID: 35078195.
  • Yadav VS, Mir RA, Bhatia A, Yadav R, Shadang M, Chauhan SS, Dhingra K, Kharbanda OP, Yadav R, Garg R. Metallothionein levels in gingival crevicular fluid, saliva, and serum of smokers and non-smokers with chronic periodontitis. J Periodontol. 2021 Sep;92(9):1329-1338. doi: 10.1002/JPER.20-0314. Epub 2020 Nov 9. PMID: 33107036.
  • Sharma R, Kumar V, Logani A, Chawla A, Mir RA, Sharma S, Kalaivani M. Association between the concentration of active MMP-9 in pulpal blood and pulpotomy outcome in permanent mature teeth with irreversible pulpitis - a preliminary study. Int Endod J. 2021 Apr;54(4):479-489. doi: 10.1111/iej.13437. Epub 2020 Dec 13. PMID: 33128238.
  • Olou AA, Sarkar A, Bele A, Gurumurthy CB, Mir RA, Ammons SA, Mirza S, Saleem I, Urano F, Band H, Band V. Mammalian ECD protein is a novel negative regulator of the PERK arm of unfolded protein response. Mol Cell Biol. 2017 28;37(18). pii e00030-17
  • Dar MS, Singh P, Mir RA, Dar MJ. Βeta-catenin N-terminal domain: An enigmatic region prone to cancer-causing mutations. Mutat Res Rev Mutat Res. 2017 Jul;773:122-133. doi: 10.1016/j.mrrev.2017.06.001. Epub 2017 Jun 12. PMID: 28927523.
  • Mir RA, Lovelace J, Schafer NP, Simone PD, Kellezi A, Kolar C, Spagnol G, Sorgen PL, Band H, Band V, Borgstahl GEO. Biophysical characterization and modeling of human Ecdysoneless (ECD) protein supports a scaffolding function. AIMS Biophys. 2016;3(1):195-208. doi: 10.3934/biophy.2016.1.195. Epub 2016 Mar 9. PMID: 28492064; PMCID: PMC5421643.
  • Mir RA, Bele A, Mirza S, Srivastava S, Olou AA, Ammons SA, Kim JH, Gurumurthy CB, Qiu F, Band H, Band V. A Novel Interaction of Ecdysoneless (ECD) Protein with R2TP Complex Component RUVBL1 Is Required for the Functional Role of ECD in Cell Cycle Progression. Mol Cell Biol. 2015 Dec 28;36(6):886-99. doi: 10.1128/MCB.00594-15. PMID: 26711270; PMCID: PMC4810467.
  • Bele A, Mirza S, Zhang Y, Mir RA, Lin S, Kim JH, Gurumurthy CB, West W, Qiu F, Band H, Band V. The cell cycle regulator ecdysoneless cooperates with H-Ras to promote oncogenic transformation of human mammary epithelial cells. Cell Cycle. 2015;14(7):990-1000. doi: 10.1080/15384101.2015.1006982. PMID: 25616580; PMCID: PMC4614725.
  • Chaturvedi NK, Mir RA, Band V, Joshi SS, Guda C. Experimental validation of predicted subcellular localizations of human proteins. BMC Res Notes. 2014 Dec 15;7:912. doi: 10.1186/1756-0500-7-912. PMID: 25510246; PMCID: PMC4301851.
  • Kumar R, Tripathi V, Ahmad M, Nath N, Mir RA, Chauhan SS, Luthra K. CXCR7 mediated Giα independent activation of ERK and Akt promotes cell survival and chemotaxis in T cells. Cell Immunol. 2012;272(2):230-41. doi: 10.1016/j.cellimm.2011.09.015. Epub 2011 Oct 20. Erratum in: Cell Immunol. 2014 Aug;290(2):251. PMID: 22070874.
  • Mir RA, Chauhan SS. Down-regulation of a matrix degrading cysteine protease cathepsin L, by acetaldehyde: role of C/EBPα. PLoS One. 2011;6(6):e20768. doi: 10.1371/journal.pone.0020768. Epub 2011 Jun 8. PMID: 21687683; PMCID: PMC3110794.
  • Mittal S, Mir RA, Chauhan SS. Post-transcriptional regulation of human cathepsin L expression. Biol Chem. 2011 May;392(5):405-13. doi: 10.1515/BC.2011.039. Epub 2011 Mar 14. PMID: 21395501.
  • Katara R*, Mir RA*, Shukla AA, Tiwari A, Singh N, Chauhan SS. Wild-type p53-dependent transcriptional upregulation of cathepsin L expression is mediated by C/EBPα in human glioblastoma cells. Biol Chem. 2010 Sep;391(9):1031-40. doi: 10.1515/BC.2010.103. PMID: 20536385. *Equal authorship
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Shikha Roy

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Isha Rathore

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Anish Kumar Chauhan

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Nisha Kumari

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Mahek Farhan

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